GCC2015 Conference

The GCC2015 programme ends with a two day meeting featuring keynotes, accepted talks, lightning talks, poster and vendor sessions, birds-of-a-feather meetups, and the conference dinner.

Tuesday 7 July: Meeting Day 1

The first day of the meeting will feature accepted and lightning talks, and birds-of-a-feather meetups, poster, and sponsor sessions. Formal content will run from approximately 9:00-18:00, with birds-of-a-feather (and Hackathon followup meetings) running in to the evening.

Time

Content

07:30

Breakfast opens in Nelson Court for those staying in UEA Lodging

08:00

Registration Opens

09:00

Welcome and Opening

Dan MacLean, The Sainsbury Lab
Slides

09:15

Session 1

Moderator: Dan MacLean, The Sainsbury Lab

09:15	Keynote Address: Modeling molecular heterogeneity between individuals and single cells Oliver Stegle, Statistical genomics and systems genetic research group, European Bioinformatics Institute (EBI)
10:00	Galaxy as backend for TraIT genotype to phenotype studies Youri Hoogstrate, Erasmus MC Rotterdam
10:15	Enabling large scale Genotype-Tissue Expression studies using Galaxy Genna Gliner, Princeton University

10:30

Break

11:00

Session 2

Moderator: Anne Pajon, Cancer Research UK

11:00	BioJS2Galaxy: Automatic Conversion of BioJS Visualisation Components into Galaxy Plugins Sebastian Wilzbach, Technical University of Munich
11:20	Proteomics Visualization in Galaxy James E Johnson, Minnesota Supercomputing Institute, University of Minnesota
11:40	Integration and visualization of sequence results across experiments for method development and quality control Bradley W. Langhorst, New England Biolabs
12:00	GSuite Tools – efficiently manage and analyze collections of genomic data Boris Simovski, University of Oslo
12:15	Reproducible galaxy: Improved development and administration Aarif Mohamed Nazeer Batcha

12:30

Lunch

13:30

Session 3

Moderator: Manuel Corpas, The Genome Analysis Centre

13:30	State of the Galaxy Anton Nekrutenko, Penn State University and James Taylor, Johns Hopkins University
14:05	Galaxy and the RNA Bioinformatics Center Cameron Smith and Torsten Houwaart, University of Freiburg
14:25	Data-Driven Science: Advanced Storage Systems for Genomics Analysis James Reaney, SGI Corp

15:00

Sponsor Exhibition and Poster Session I

Odd numbered posters

16:20

Session 4

Moderator: Jeremy Goecks, George Washington University

16:20	Galaxy Tool Shed: Tool Discovery and Repository Management Martin Čech, Penn State University
16:40	ReGaTE, Registration of Galaxy Tools in Elixir Olivia Doppelt-Azeroual, Center of Bioinformatics, Biostatistics and Integrative Biology, Institut Pasteur
17:00	A curated Domain centric shared Docker registry linked to the Galaxy toolshed François Moreews, Genscale Team, IRISA, and Yvan le Bras, Genouest Bioinformatics facility, INRIA/IRISA
17:15	Lightning Talks Session I

18:00

Break

18:20

Dinner (on your own)

Birds-of-a-Feather Flocking

22:00

Finish

Wednesday 8 July: Meeting Day 2

The final day continues the program from the first day, and ends with the Conference Dinner. Formal meeting content will be finished by 18:00.

Time

Content

07:30

Breakfast opens in Nelson Court for those staying in UEA Lodging

08:00

Registration Open

09:00

Welcome

09:10

Session 5

Moderator: Graham Etherington, The Genome Analysis Centre

09:10	A galaxy metagenomic workflow for reference-tree based phylogenetic placement (MG-RTPP) Ambrose Andongabo, Rothamsted Research
09:30	Less Click, More Quick: Unattended Installation of Galaxy’s Built-in Reference Data Daniel Blankenberg, Pennsylvania State University
09:50	Galaxy flavours – shipped by a whale Björn Grüning, University of Freiburg
10:10	Planemo – A Galaxy Tool SDK John Chilton, Penn State University

10:30

Break

11:00

Session 6

Moderator: Karen Reddy, Johns Hopkins University

11:00	Galaxy Interactive Environments – a new way to interact with your data Eric Rasche, Texas A&M University; and Björn Grüning, University of Freiburg
11:20	Opening Galaxy to script execution by everyone Marius van den Beek, Institut de Biologie Paris-Seine
11:40	Using Galaxy resources from the command line Clare Sloggett, University of Melbourne
11:55	Integrating Galaxy and Tripal: Cyberinfrastructure for the Genome Community Database Emily Grau
12:15	Simplifying IT for Local Galaxy Anushka Brownley, BioTeam

12:30

Lunch